Cat.NO.:A265658 Purity:98%
Product Details of [ 100124-06-9 ]
CAS No. : | 100124-06-9 |
Formula : |
C12H9BO3 |
M.W : |
212.01
|
SMILES Code : | OB(C1=C2OC3=CC=CC=C3C2=CC=C1)O |
MDL No. : | MFCD00092336 |
InChI Key : | ZXHUJRZYLRVVNP-UHFFFAOYSA-N |
Pubchem ID : | 2734328 |
Safety of [ 100124-06-9 ]
GHS Pictogram: | ![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Computational Chemistry of [ 100124-06-9 ] Show Less
Physicochemical Properties
Num. heavy atoms | 16 |
Num. arom. heavy atoms | 13 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 63.55 |
TPSA ?
Topological Polar Surface Area: Calculated from |
53.6 Ų |
Lipophilicity
Log Po/w (iLOGP)?
iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)?
XLOGP3: Atomistic and knowledge-based method calculated by |
2.57 |
Log Po/w (WLOGP)?
WLOGP: Atomistic method implemented from |
1.27 |
Log Po/w (MLOGP)?
MLOGP: Topological method implemented from |
1.02 |
Log Po/w (SILICOS-IT)?
SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.79 |
Consensus Log Po/w?
Consensus Log Po/w: Average of all five predictions |
1.13 |
Water Solubility
Log S (ESOL):?
ESOL: Topological method implemented from |
-3.31 |
Solubility | 0.104 mg/ml ; 0.000491 mol/l |
Class?
Solubility class: Log S scale |
Soluble |
Log S (Ali)?
Ali: Topological method implemented from |
-3.34 |
Solubility | 0.0961 mg/ml ; 0.000453 mol/l |
Class?
Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)?
SILICOS-IT: Fragmental method calculated by |
-3.86 |
Solubility | 0.0293 mg/ml ; 0.000138 mol/l |
Class?
Solubility class: Log S scale |
Soluble |
Pharmacokinetics
GI absorption?
Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant?
BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate?
P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor?
Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor?
Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor?
Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor?
Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
Yes |
CYP3A4 inhibitor?
Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
Yes |
Log Kp (skin permeation)?
Skin permeation: QSPR model implemented from |
-5.77 cm/s |
Druglikeness
Lipinski?
Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose?
Ghose filter: implemented from |
None |
Veber?
Veber (GSK) filter: implemented from |
0.0 |
Egan?
Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge?
Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score?
Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
Medicinal Chemistry
PAINS?
Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk?
Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness?
Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility?
Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.96 |
Application In Synthesis of [ 100124-06-9 ]
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
- Downstream synthetic route of [ 100124-06-9 ]
[ 100124-06-9 ] Synthesis Path-Downstream 1~13
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With potassium carbonate;palladium diacetate; tris-(o-tolyl)phosphine; In ethanol; water; toluene; at 90℃; for 4.5h;Inert atmosphere; | [Example 5] This example will give descriptions of a method of synthesizing 2-[4-(dibenzofuran-4-yl)phenyl]-1-phenyl-1H-benzimidazole (abbreviation: DBFBIm-II) represented by the following Structural formula (130). [Show Image] [Synthesis of 2-[4-(dibenzofuran-4-yl)phenyl]-1-phenyl-1H-benzimidazole (abbreviation: DBFBIm-II)] The synthesis scheme of 2-[4-(dibenzofuran-4-yl)phenyl]-1-phenyl-1H-benzimidazole (abbreviation: DBFBIm-II) is illustrated in (B-5). [Show Image] In a 100-mL three-neck flask, a mixture of 1.7 g (5.0 mmol) of <strong>[2620-76-0]2-(4-bromophenyl)-1-phenyl-1H-benzimidazole</strong>, 1.0 g (5.0 mmol) of dibenzofuran-4-boronic acid, 22 mg (0.1 mmol) of palladium(II) acetate, 60 mg (0.2 mmol) of tri(ortho-tolyl)phosphine, 30 mL of toluene, 3 mL of ethanol, and 7.5 mL of a 2 mol/L aqueous solution of potassium carbonate was stirred to be degassed under reduced pressure. Then, the mixture was heated and stirred at 90 C for 4.5 hours under a nitrogen stream. After a predetermined time, 50 mL of toluene was added to this mixture solution, and the organic layer of the resulting suspension was suction filtered through Celite (produced by Wako Pure Chemical Industries, Ltd., Catalog No. 531-16855). The resulting filtrate was concentrated, followed by purification using silica gel column chromatography. The chromatography was carried out using a mixed solvent of toluene and ethyl acetate in a ratio of 19 to 1 as a developing solvent. The obtained fractions were concentrated, and hexane was added to the mixture, followed by irradiation with ultrasonic waves. The precipitated solid was collected by suction filtration. Thus, 2.0 g of a white powder was obtained in 92% yield, which was the substance to be produced. The Rf values of the produced substance and <strong>[2620-76-0]2-(4-bromophenyl)-1-phenyl-1H-benzimidazole</strong> were respectively 0.10 and 0.22, which were found by silica gel thin layer chromatography (TLC) (with a developing solvent containing ethyl acetate to hexane in a ratio of 1 to 10). A nuclear magnetic resonance (NMR) method identified this compound as 2-[4-(dibenzofuran-4-yl)phenyl]-1-phenyl-1H-benzimidazole (abbreviation: DBFBIm-II), which was the substance to be produced. 1H NMR data of the obtained substance are as follows: 1H NMR (CDCl3, 300 MHz): δ (ppm) = 7.27-7.63 (m, 13H), 7.74-7.78 (m, 2H), 7.89-8.00 (m, 5H). FIGS. 21A and 21B illustrate the 1H NMR charts. Note that FIG. 21B is a chart showing an enlarged part of FIG. 21 A in the range of 7.0 ppm to 8.5 ppm. Further, FIG. 22A shows an absorption spectrum of a toluene solution of DBFBIm-II, and FIG. 22B shows an emission spectrum thereof. FIG. 23A shows an absorption spectrum of a thin film of DBFBIm-II, and FIG. 23B shows an emission spectrum thereof. The absorption spectrum was measured using an ultraviolet-visible spectrophotometer (V-550, produced by JASCO Corporation). The measurements were performed with samples prepared in such a manner that the solution was put in a quartz cell while the thin film was obtained by evaporation onto a quartz substrate. The absorption spectrum of the solution was obtained by subtracting the absorption spectra of quartz and toluene from those of quartz and the solution, and the absorption spectrum of the thin film was obtained by subtracting the absorption spectrum of a quartz substrate from those of the quartz substrate and the thin film. In FIGS. 22A and 22B and FIGS. 23A and 23B, the horizontal axis represents wavelength (nm) and the vertical axis represents intensity (arbitrary unit). In the case of the toluene solution, an absorption peak was observed at around 323 nm, and emission wavelength peaks were 365 nm, 385 nm and 405 nm (excitation wavelength: 329 nm). In the case of the thin film, absorption peaks were observed at around 300 nm and 324 nm, and an emission wavelength peak was 405 nm (excitation wavelength: 330 nm). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In tetrahydrofuran; water; for 12h;Reflux; | 200mL of tetrahydrofuran is introduced into the compound B-1 and diphenyl 14.8g (50mmol) prepared in Synthesis Example 5 and [b, d] furan-4-yl boronic acid (12.7g, 60mmol), followed by Pd (PPh3) 4 (2.89g, 2.5mmol) and 100mL2MK2CO3 aqueous solution, the resulting mixture was stirred for 12 hours while refluxing. The temperature was cooled to normal temperature and distilled water was extracted with chloroform. The organic layer was dried over anhydrous magnesium sulfate (MgSO4) was dried, then the solvent was removed, and subjected to silica gel column chromatography to give 16.1g (42mmol, 84%) Compound E-1. |
78% | With potassium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 120℃; for 15h; | Preparation of Compound 8-1 [206] Compound 7-1 (10 g, 33.8 mmol), dibenzo[b,d]furan-4-ylboronic acid (8.6 g, 40.56 mmol), Pd(PPh3)4 (2 g, 1.7mmol), K2CO3 (34 g, 321 mmol), toluene 60mL, EtOH 12mL and purified water 12mL were mixed and then stirred at 120C for 15 hours. After termination of the reaction, the resultant mixture was allowed to stand and the water layer was removed, after which the organic layer was concentrated. Silica column purification was then carried out, yielding Compound 8-1 (10.2 g, 78%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
palladium diacetate; In methanol; ethanol; hexane; water; acetone; toluene; | Synthesis Method of 3,6-di(dibenzofuran-4-yl)-9-phenyl-9H-carbazole (abbreviated as DBF2PC-II)To a 200-mL three-neck flask were added 2.0 g (5.0 mmol) of <strong>[57103-20-5]3,6-dibromo-9-phenyl-9H-carbazole</strong>, 3.2 g (11 mmol) of dibenzofuran-4-boronic acid, 10 mg (0.1 mmol) of palladium(II) acetate, 30 mg (0.1 mmol) of tris(o-tolyl)phosphine, 50 mL of toluene, 5 mL of ethanol, and 7.5 mL of a 2 mol/L aqueous potassium carbonate solution.This mixture was degassed while being stirred under reduced pressure, and then heated and stirred at 90° C. for 6.5 hours under a nitrogen stream to be reacted.After the reaction, 250 mL of toluene was added to this reaction mixture and the mixture was heated.The mixture was filtered through Celite (produced by Wako Pure Chemical Industries, Ltd., Catalog No. 531-16855), alumina, and Florisil (produced by Wako Pure Chemical Industries, Ltd., Catalog No. 540-00135) in this order to give a filtrate.The resulting filtrate was purified by silica gel column chromatography (a developing solvent in which the toluene/hexane ratio was 1:3).The obtained fraction was concentrated, acetone, methanol, and water were added thereto, and the mixture was irradiated with ultrasonic waves.Then, acetone and methanol were added to the obtained precipitate and the mixture was irradiated with ultrasonic waves, filtrated, washed, and dried.Thereby, 2.8 g of a target substance, white powder, was obtained in 69percent yield.A reaction scheme of the above synthesis method is illustrated in the following (E-1).The Rf values of the white powder obtained through the reaction and <strong>[57103-20-5]3,6-dibromo-9-phenyl-9H-carbazole</strong> were respectively 0.32 and 0.55, which were found by silica gel thin layer chromatography (TLC) (a developing solvent in which the ethyl acetate/hexane ratio was 1:10).The white powder obtained by the step 1 was subjected to nuclear magnetic resonance (NMR) spectroscopy.The measurement data are shown below.show the 1H NMR charts.Note that is an enlarged chart of .By the measurement results, it was confirmed that the white powder obtained by the step 1 was DBF2PC-II, which is represented by the structural formula (208).1H NMR (CDCl3, 300 M Hz): delta (ppm)=7.37 (dt, J=7.8 Hz, J=1.2 Hz, 2H), 7.44-7.56 (m, 5H), 7.60-7.69 (m, 8H), 7.75 (dd, J=7.2 Hz, J=1.5 Hz, 2H), 7.95 (dd, J=7.8 Hz, J=1.5 Hz, 2H), 8.00-8.04 (m, 4H), 8.75 (d, J=1.5 Hz, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With sodium carbonate;bis(triphenylphosphine)palladium(II) dichloride; In water; acetonitrile; | Step 1: Synthesis of 3,5-Dimethyl-2-(dibenzofuran-4-yl)pyrazine (abbreviation: Hdm4 dbfpr) First, into a recovery flask equipped with a reflux pipe were placed 1.51 g of <strong>[38557-72-1]2-chloro-3,5-dimethylpyrazine</strong>, 2.25 g of 4-dibenzofuranylboronic acid, 1.12 g of sodium carbonate, 0.048 g of bis(triphenylphosphine)palladium(II) dichloride (abbreviation: Pd(PPh3)2Cl2), 15 mL of water, and 15 mL of acetonitrile, and the air inside the flask was replaced with argon. Heating was performed by microwave irradiation (2.45 GHz, 100 W) of this reaction container for 10 minutes, so that reaction occurred. After that, water was added to this reaction solution, and extraction with dichloromethane was carried out. A solution of the obtained extract was washed with water and dried over magnesium sulfate. After the drying, the solution was filtered. After the solvent of this solution was distilled, the obtained residue was washed with methanol, so that the pyrazine derivative which was the object of the synthesis, Hdm4 dbfpr, was obtained (a pale orange powder in a yield of 65%). Note that a microwave synthesis system (Discover, produced by CEM Corporation) was used for the microwave irradiation. The synthesis scheme of Step 1 is illustrated in the following scheme (x-1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In water; toluene; for 12h;Inert atmosphere; Reflux; | (4-Dibenzofuranyl) boronic acid ((4-dibenzofuranyl) boronic acid), 30 g (141.5 mmol), <strong>[57381-62-1]methyl-2-bromo-4-chlorobenzoate</strong> (methyl-2-bromo-5-chlorobenzoate), 37.1 g ( 148.6 mmol), tetrakistriphenylphosphine palladium 8.2 g (7.1 mmol) dissolved in toluene 550 ml was added to flask placed in a nitrogen atmosphere. Potassium carbonate (potassium carbonate) 104.2 g (707.51 mmol) was dissolved in 550 ml toluene, and the aqueous solution 353.8 ml was stirred under reflux for 12 hours. After completion of the reaction, the mixture was extracted with ethyl acetate, dried with magnesium sulfite (magnesium sulphate), filtered and the filtrate was concentrated under reduced pressure. The resulting mixture was purified by silica gel column chromatography using n-hexane / dichloromethane (7:3 volume ratio) to give the desired compound of intermediate (D) 38.2 g (80percent yield) as a white solid. |
71% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In tetrahydrofuran; water; at 90℃; for 21h;Inert atmosphere; | 50 g (200 mmol) of methyl-2-bromo-5-c
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